Catching up with the last few:
The Alien over Pale Blue Dot: not a huge fan of PBD...it's one of the "bigger" songs on D/T that didn't quite stick. The Alien is a good one.
Budokan over Score: I don't love everything about Budokan, but there is some amazing stuff in there. Same can be said for Score, really, but Budokan edges it out
LTE1 over LTE2: This is really close.
Illumination over A View: I like, don't love, both songs. IT has a slight edge for me.