I've seen quite a few courtesy of ProgPower
Start to finish
(at ProgPower)
Angra - Holy Land
Angra - Omni
Blind Guardian - Imaginations from the Other Side
Evergrey - In Search of Truth
Fates Warning - Awaken the Guardian
Green Carnation - Light of Day, Day of Darkness
Haken - Visions
Jon Olivia's Pain - Streets
Labyrinth - Return to Heaven Denied
Pagan's Mind - Celestial Entrance
Pain of Salvation - Remedy Lane
Royal Hunt - Paradox
Seventh Wonder - Mercy Falls
Stratovarius - Visions
Voyager - I Am the Revolution
(Outside ProgPower)
Dream Theater - The Astonishing
Dream Theater - Images and Words
Dream Theater - Scenes from a Memory
Iron Maiden - A Matter of Life and Death
Katatonia - Night is the New Day
Operation Mindcrime - Operation Mindcrime
Rush - Moving Pictures
Bruce Springsteen - The River
Threshold - Legends of the Shires
Almost the full album:
Need - Orvam (did all except for Hotel Oniro, an interlude-ish track)
Out of order:
Candlebox - Candlebox
Dream Theater - Train of Thought
Flying Colors - Flying Colors (wouldn't have remembered to include them without seeing Setlist Scotty's post)
There might be bands I've seen with just one album out where they did the whole thing and I didn't realize it, but I think this is a pretty complete list otherwise.