I would say overall I prefer the Moffatt era, and I have my fair share of criticisms for those seasons too. But every season was still plenty enjoyable for me. There are elements of the RTD era I miss, and there are elements I'm glad are gone. And the Moffatt era has new elements I love, along with areas I don't think it's as strong.
I could pick apart any episode if I wanted to, even my absolute favourites, but if I hated it that much, I'd just stop watching, and not waste my time dumping shit on it. Criticism is one thing, but at some point you have to know when you let go and move along.