I honestly don't know how you change the Score set list realistically. And when I say "realistically," I mean that you HAVE TO take the following factors into account: (1) They were going to heavily feature Octavarium since they were touring on that album; (2) They were going to play something from every album; (3) They were going to use the orchestra; and (4) They had a strict time limit.
So, what songs do you change or remove? I'll start with the easy ones from Octavarium: TROAE was going to be played no matter what. And it is a great opener. IWBY was the "hit" from that album. It was going to be played. Sacrificed Sons worked well for the orchestra and, as mentioned above, was very appropriate for a New York City show. Octavarium...yeah. Honestly, I would remove TALW. It sucked the life out of the set and isn't a great song anyway. The problem is, it is only 5:35, so it doesn't buy them much. But anyhow, if we go album by album below, let's see where we end up:
Majesty: Another Won was great. And there are no good alternatives. Keeper.
WDADU: Afterlife isn't my favorite. But what are the alternatives? They need something short. So that leaves AFIL, Status Seeker, and Ytse Jam. AFIL would have been my vote. And it saves 20 seconds. I doubt they would have chosen Status Seeker, but I would not have minded that either. But if they did, it would buy them a minute.
I&W: UAGM was okay. For this show, I would have gone with PMU, despite that it had gotten a lot of play previously. It is about :45 longer, but dumping TALW more than buys enough time.
Awake: Innocence Faded was an okay choice. CIAW or 6:00 would have worked in terms of song length. In terms of vibe, I think they would have been fine too. But a lot of people seemed to like having IF in there, so okay. No change.
FII: I liked their choice. No change.
SFAM: I was already tired of TSCO, but I get why it is there, and I'm fine with it. No change. It makes sense.
SDOIT: Granted, I hardly listen to this anymore. But at the time, this absolutely needed to be done. No change.
TOT: This is where it gets tricky. Vacant was a strange choice, but it sounded SO good with the orchestra that I would not change it for the world. But it is so short. I really wish there was a way to put SOC in there as well. I think it would have been fantastic with an orchestra behind it. But I just cannot figure out how to make it fit with the time constraints. Dumping TALW and substituting a couple of shorter songs in other places still doesn't make it fit. Bummed.
Encore: Metropolis was the right choice. No change.
So...what would I change? Not a heck of a lot, under the circumstances. In retrospect, it would have been really cool if they could somehow have done 2 nights. That would have given them a lot more freedom to change things up, which would have been amazing. If they did that, and assuming they would still keep the 8VM songs and Another Won in place, let's say they keep the first night exactly the same, and maybe we could have gotten this the second night:
TROAE
IWBY
Another Won
AFIL
PMU
CIAW
Peruvian Skies
Strange Deja Vu-Through My Words-Fatal Tragedy (they were playing this combo on the tour, and I am okay with it)
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The Glass Prison
This Dying Soul (not my first choice from TOT, but they did play the TGP->TDS combo on this tour, and that would have been cool to see)
Sacrificed Sons
Octavarium
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ACOS